ON THE PHYSICAL CHEMISTRY OF LIPID NUMBER-DIFFERENCE BETWEEN THE LEAFLETS OF A BILAYER AND ITS RELEVANCE FOR QUANTITATIVE STUDY OF BILAYER LIPID ASYMMETRY AND ASSOCIATED PROTEIN-MACHINERY

Loading...
Thumbnail Image
Degree type
Doctor of Philosophy (PhD)
Graduate group
Chemistry
Discipline
Chemistry
Biochemistry, Biophysics, and Structural Biology
Biochemistry, Biophysics, and Structural Biology
Subject
Chemical equilibrium
Lipid membranes
Membrane asymmetry
Membrane morphology
Methyl-beta-cyclodextrin
Funder
Grant number
License
Copyright date
01/01/2024
Distributor
Related resources
Author
Reagle, Tyler, Robert
Contributor
Abstract

Biomembranes are extensively inhomogeneous with respect to the compositions and distribution of the lipid molecules constructing them. The lipidome of a cell and its sub-cellular distribution constitute a nonequilibrium condition maintained by i) active expenditure of cellular energy and ii) coordination of metabolic/transport processes. Though there is lipidomic/bioinformatic evidence suggesting that the above interplay is relevant for the integration of membrane biology and lipid metabolism, the thermodynamic premises underlying a hypothesized, regulatory framework have not been rigorously tested. Moreover, the role of bilayer lipid asymmetry- referring to lipid inhomogeneity between the leaflets of a lipid bilayer- has been ignored in this context. Since bilayer lipid asymmetry is a ubiquitous feature of biomembranes across cellular life, it is likely important for membrane homeostasis, necessitating further investigation. To investigate how bilayer lipid asymmetry might serve the above role, this thesis describes observations in vesicles along with a thermodynamic analysis. These were achieved by leveraging complexation between methyl-β-cyclodextrin (mbCD) and phospholipid molecules, which adjusts the difference in the number of lipid molecules (lipid number-difference) between the leaflets of vesicles. This parameter constitutes one contribution to bilayer lipid asymmetry and mbCD-lipid complexation allowed its effects upon i) vesicle morphology, ii) bilayer phase behavior, and iii) lipid thermodynamics to be investigated. Evidence suggests that lipid number-difference modulates the chemical potential (and activity) of lipids within a bilayer. Then, to investigate generation of lipid number-difference by a transmembrane protein, an active phospholipid transporter (a flippase) of the ATP-binding cassette transporter superfamily was purified and reconstituted into a bilayer environment. This was done to eventually investigate the i) conformation and ii) catalytic efficiency of flippases in this superfamily with respect to lipid number-difference (by leveraging mbCD-lipid chemistry). Challenges encountered during purification/reconstitution are described and recommended actions proposed. Achievement of the aims associated with these efforts could contextualize i) the allosteric regulation and ii) energy transduction of such proteins within a control scheme for maintenance of embrane homeostasis.

Advisor
Baumgart, Tobias
Date of degree
2024
Date Range for Data Collection (Start Date)
Date Range for Data Collection (End Date)
Digital Object Identifier
Series name and number
Volume number
Issue number
Publisher
Publisher DOI
Journal Issue
Comments
Recommended citation