Internal interfaces in materials play an important role in the performance of many devices used in energy applications including solar cells, LEDs, passive electronics, and fuel cells. Efficiencies in energy and power consumption may be realized by optimizing and often miniaturizing these devices. Our studies show that internal boundaries and biomaterial interfaces cause local property variations. These effects will dominate device performance as the systems become smaller. A fundamental understanding of the effect of atomic structure on local properties is a prerequisite to device optimization. Developing this understanding requires new probes that access local properties, controlled interface structure, atomic resolution electron microscopy and first principles calculations of geometric and electronic structure.