Selecting biomedical data sources according to user preferences

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dc.contributor.authorCohen-Boulakia, Sarah
dc.contributor.authorCohen-Boulakia, Sarah
dc.contributor.authorLair, Severine
dc.contributor.authorStransky, Nicolas
dc.contributor.authorGraziani, Stephane
dc.contributor.authorRadvanyi, Francois
dc.contributor.authorBarillot, Emmanuel
dc.contributor.authorFroidevaux, Christine
dc.date2023-05-17T00:26:43.000
dc.date.accessioned2023-05-22T12:47:22Z
dc.date.available2023-05-22T12:47:22Z
dc.date.issued2005-07-01
dc.date.submitted2007-02-23T07:25:54-08:00
dc.description.abstractMotivation: Biologists are now faced with the problem of integrating information from multiple heterogeneous public sources with their own experimental data contained in individual sources. The selection of the sources to be considered is thus critically important. Results: Our aim is to support biologists by developing a module based on an algorithm that presents a selection of sources relevant to their query and matched to their own preferences. We approached this task by investigating the characteristics of biomedical data and introducing several preference criteria useful for bioinformaticians. This work was carried out in the framework of a project which aims to develop an integrative platform for the multiple parametric analysis of cancer. We illustrate our study through an elementary biomedical query occurring in a CGH analysis scenario.
dc.description.commentsPostprint version. Published in <em>Bioinformatics</em>, Volume 20 Supplement 1, August 2004, pages i86-93.<br> Publisher URL: http://dx.doi.org/10.1093/bioinformatics/bth949 <br><br>NOTE: At the time of publication, author Sarah Cohen-Boulakia was affiliated with the Université Paris-Sud. Currently February 2007, she is a faculty member in the Department of Bioengineering at the University of Pennsylvania.
dc.identifier.urihttps://repository.upenn.edu/handle/20.500.14332/6337
dc.legacy.articleid1318
dc.legacy.fulltexturlhttps://repository.upenn.edu/cgi/viewcontent.cgi?article=1318&amp;context=cis_papers&amp;unstamped=1
dc.source.issue298
dc.source.journalDepartmental Papers (CIS)
dc.source.peerreviewedtrue
dc.source.statuspublished
dc.subject.otherbioinformatics
dc.subject.otherbiological databases
dc.subject.othermetadata
dc.subject.otheruser preferences
dc.titleSelecting biomedical data sources according to user preferences
dc.typeArticle
digcom.contributor.authorisAuthorOfPublication|email:sarahcb@seas.upenn.edu|institution:University of Pennsylvania|Cohen-Boulakia, Sarah
digcom.contributor.authorLair, Severine
digcom.contributor.authorStransky, Nicolas
digcom.contributor.authorGraziani, Stephane
digcom.contributor.authorRadvanyi, Francois
digcom.contributor.authorBarillot, Emmanuel
digcom.contributor.authorFroidevaux, Christine
digcom.identifiercis_papers/298
digcom.identifier.contextkey256827
digcom.identifier.submissionpathcis_papers/298
digcom.typearticle
dspace.entity.typePublication
relation.isAuthorOfPublication4e48c039-796f-4fd2-be71-a638898038f1
relation.isAuthorOfPublication.latestForDiscovery4e48c039-796f-4fd2-be71-a638898038f1
upenn.schoolDepartmentCenterDepartmental Papers (CIS)
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