Broad-Specificity mRNA–rRNA Complementarity in Efficient Protein Translation

Loading...
Thumbnail Image
Penn collection
Departmental Papers (BE)
Degree type
Discipline
Subject
Molecular, Cellular, and Tissue Engineering
Funder
Grant number
License
Copyright date
Distributor
Related resources
Author
Barendt, Pamela A
Shah, Najaf A
Barendt, Gregory A
Contributor
Abstract

Studies of synthetic, well-defined biomolecular systems can elucidate inherent capabilities that may be difficult to uncover in a native biological context. Here, we used a minimal, reconstituted translation system from Escherichia coli to identify efficient ribosome binding sites (RBSs) in an unbiased, high-throughput manner. We applied ribosome display, a powerful in vitro selection method, to enrich only those mRNA sequences which could direct rapid protein translation. In addition to canonical Shine-Dalgarno (SD) motifs, we unexpectedly recovered highly efficient cytosine-rich (C-rich) sequences that exhibit unmistakable complementarity to the 16S rRNA of the small subunit of the ribosome, indicating that broad specificity base-pairing may be an inherent, general mechanism for efficient translation. Furthermore, given the conservation of ribosomal structure and function across species, the broader relevance of C-rich RBS sequences identified through our in vitro evolution approach is supported by multiple, diverse examples in nature, including C-rich RBSs in several bacteriophage and plants, a poly-C consensus before the start codon in a lower eukaryote, and Kozak-like sequences in vertebrates.

Advisor
Date Range for Data Collection (Start Date)
Date Range for Data Collection (End Date)
Digital Object Identifier
Series name and number
Publication date
2012-03-22
Journal title
Volume number
Issue number
Publisher
Publisher DOI
Journal Issue
Comments
Barendt, P. A., Shah, N. A., Barendt, G. A., & Sarkar, C. A. (2012) Broad-Specificity mRNA–rRNA Complementarity in Efficient Protein Translation. PLoS Genetics 8(3): e1002598. doi: http://dx.doi.org/10.1371/journal.pgen.1002598 © Barendt et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Recommended citation
Collection